Plant Transcription factor database - CTBE
version: 3.0


The National Center for Biotechnology Informacion, NCBI, creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information - all for the better understanding of molecular processes affecting human health and disease.
The Institute for Genomic Research (TIGR) is a not-for-profit research institute whose primary research interests are in structural, functional and comparative analysis of genomes and gene products from a wide variety of organisms including viruses, eubacteria (both pathogens and non-pathogens, archaea (the so-called third domain of life), and eukaryotes (plants, animals, fungi and protists such as the malarial parasite).
The DOE Joint Genome Institute provides high quality genome sequence data from a variety of organisms. Also supports programs dedicated to functional and evolutionary genomics, and the development of bioinformatics tools.
Sheen's Lab
Sheen's laboratory is interested in the elucidation of molecular mechanisms underlying plant responses to growth and stress hormones, nutrients, environmental stresses, and pathogens.
AtTFDB is a comprehensive and public database for Arabidopsis transcription factors.
PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, all from previously published reports. It covers vascular plants only. In addition to the motifs originally reported, their variations in other genes or in other plant species reported later are also compiled. The PLACE database also contains a brief description of each motif and relevant literature with PubMed ID numbers. DDBJ/EMBL/GenBank nucleotide sequence databases accession numbers will be also included.
Gramene is a curated, open-source, Web-accessible data resource for comparative genome analysis in the grasses. Their goal is to facilitate the study of cross-species homology relationships using information derived from public projects involved in genomic and EST sequencing, protein structure and function analysis, genetic and physical mapping, interpretation of biochemical pathways, gene and QTL localization and descriptions of phenotypic characters and mutations.
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains and families.
QuantPrime is an intuitive and user-friendly, fully automated tool for primer pair design in small- to large-scale qPCR analyses.
GRASSIUS provides a public web resource composed by a collection of databases, computational and experimental resources that relate to the control of gene expression in the grasses, and their relationship with agronomic traits.