Plant Transcription factor database - CTBE
version: 3.0

Gene model: evm.TU.supercontig_81.112

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_81.112
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485038 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g74020.1 Score: 1

Physcomitrella patens

34063 Score: 1

Populus trichocarpa

203640 Score: 1

Sorghum bicolor

5002867 Score: 1

Selaginella moellendorffii

36646 Score: 1

Vitis vinifera

GSVIVP00024277001 Score: 1

Zea mays

GRMZM2G067702_P01 Score: 1

Expression data

Expressed Sequence Tags

At.39869
Arabidopsis thaliana myb family transcription factor (AT3G10760) mRNA, complete cds /cds=p(235,1242) /gb=NM_111913
At.47951
Arabidopsis thaliana PCL1 (PHYTOCLOCK 1); DNA binding (PCL1) mRNA, complete cds /cds=p(159,1130) /gb=NM_001035746
Pba.5228
WS02531.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_L06 3', mRNA sequence /clone=WS02531_L06 /clone_end=3' /gb=DT486700
Ppa.9533
DC918153 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp. patens cDNA clone ppaa8g23 3', mRNA sequence /clone=ppaa8g23 /clone_end=3' /gb=DC918153
Pth.5228
WS02531.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_L06 3', mRNA sequence /clone=WS02531_L06 /clone_end=3' /gb=DT486700
Vvi.23794
sT7aVVM025L13053 VVM Vitis vinifera cDNA clone VVM025L13053 5' similar to emb_CAN81044.1 hypothetical protein [Vitis vinifera]. Expect = 3e-72, mRNA sequence /clone=VVM025L13053 /clone_end=5' /gb=FC069748

Domain Architecture

G2-like G2-like evm.TU.supercontig_81.112
DomainStartEndBit scoreE-value
Myb_DNA-binding16821841.82.8e-09
G2-like17121896.81.1e-28

Sequences