Plant Transcription factor database - CTBE
version: 3.0

Gene model: evm.TU.supercontig_10.12

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_10.12
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478672 Score: 1

Arabidopsis thaliana

AT3G13040.1 Score: 1
AT3G13040.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g49040.1 Score: 1

Populus trichocarpa

269316 Score: 1

Sorghum bicolor

4995425 Score: 1

Selaginella moellendorffii

438638 Score: 1

Vitis vinifera

GSVIVP00029711001 Score: 1

Zea mays

GRMZM2G010920_P01 Score: 1

Expression data

Expressed Sequence Tags

At.11993
Arabidopsis thaliana myb family transcription factor (AT3G13040) mRNA, complete cds /cds=p(259,1608) /gb=NM_112141
At.26183
Arabidopsis thaliana myb family transcription factor (AT5G29000) mRNA, complete cds /cds=p(47,1288) /gb=NM_122784
At.4525
Arabidopsis thaliana PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (PHR1) mRNA, complete cds /cds=p(156,1385) /gb=NM_119003
Mtr.10993
Medicago truncatula clone MTYFD_FE_FF_FG1G-F-19 unknown mRNA /cds=p(94,1086) /gb=BT052374
Mtr.12360
AC2769 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617082
Os.13978
Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence /cds=p(326,1099) /gb=AK069306
Os.24994
Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence /cds=p(352,1638) /gb=AK063486
Os.47566
Oryza sativa (japonica cultivar-group) Os08g0346500 (Os08g0346500) mRNA, complete cds /cds=p(1,924) /gb=NM_001068140
Os.52219
Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence /cds=p(203,1606) /gb=AK065704
Os.5279
Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence /cds=p(276,1715) /gb=AK067950
Os.7599
Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence /cds=p(162,1151) /gb=AK071731
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Ppa.2229
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_169970) mRNA, complete cds /cds=p(529,3219) /gb=XM_001777685
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Vvi.19331
WIN061.C21_I04 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_I04 3', mRNA sequence /clone=WIN061_I04 /clone_end=3' /gb=EC957036

Domain Architecture

G2-like G2-like evm.TU.supercontig_10.12
DomainStartEndBit scoreE-value
Myb_DNA-binding25931049.21.6e-11
G2-like26231077.85.9e-23

Sequences