Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os12g39640.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os12g39640
Gene model
LOC_Os12g39640.1
Description
MYB family transcription factor, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_62.51 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g55590.1 Score: 1
LOC_Os12g39640.1 Score: 1

Populus trichocarpa

557338 Score: 1
827942 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g55590.1 Score: 1
LOC_Os12g39640.1 Score: 1

Sorghum bicolor

5008869 Score: 1

Expression data

Expressed Sequence Tags

Os.47453
OC14H03_T3.ab1 OC Oryza sativa cDNA clone OC14H03_T3.ab1 similar to NP_027544.1| (NM_126400) expressed protein [Arabidopsis thaliana], mRNA sequence /clone=OC14H03_T3.ab1 /gb=CA756985
Os.88993
Oryza sativa (japonica cultivar-group) Os12g0586300 (Os12g0586300) mRNA, complete cds /cds=p(1,1188) /gb=NM_001073688
Pba.138
WS01230.BR_K12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_K12 5', mRNA sequence /clone=WS01230_K12 /clone_end=5' /gb=DT474056
Pth.138
Populus trichocarpa clone WS0123_L02 unknown mRNA /cds=p(142,807) /gb=EF147597
Vvi.15531
WIN026.TB24.1_C08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN026_C08 3', mRNA sequence /clone=WIN026_C08 /clone_end=3' /gb=EC924639
Vvi.19728
CSECS173G04_POSu0038 CabSau Berry Postveraison Stage 38 (POSu0038) Vitis vinifera cDNA clone CSECS173G04 3', mRNA sequence /clone=CSECS173G04 /clone_end=3' /gb=DV939966
Vvi.6387
WIN027.TB24.1_K06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_K06 3', mRNA sequence /clone=WIN027_K06 /clone_end=3' /gb=EC925069

Domain Architecture

G2-like G2-like LOC_Os12g39640.1
DomainStartEndBit scoreE-value
Myb_DNA-binding24930038.92e-08
G2-like25230073.51.1e-21

Sequences