Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os07g25710.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os07g25710
Gene model
LOC_Os07g25710.1
Description
myb-like DNA-binding domain containing protein, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491902 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.975
LOC_Os07g25710.3 Score: 0.975

Arabidopsis thaliana

AT4G28610.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.974
LOC_Os07g25710.3 Score: 0.974

Populus trichocarpa

711538 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.974
LOC_Os07g25710.3 Score: 0.974

Sorghum bicolor

4999599 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.921
LOC_Os07g25710.3 Score: 0.921

Vitis vinifera

GSVIVP00032839001 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.974
LOC_Os07g25710.3 Score: 0.974

Zea mays

GRMZM2G162409_P03 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.926
LOC_Os07g25710.3 Score: 0.926

Expression data

Expressed Sequence Tags

At.11993
Arabidopsis thaliana myb family transcription factor (AT3G13040) mRNA, complete cds /cds=p(259,1608) /gb=NM_112141
At.50439
Arabidopsis thaliana myb family transcription factor (AT5G06800) mRNA, complete cds /cds=p(213,1340) /gb=NM_120763
Hv.21567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf70h19, mRNA sequence /gb=AK250181
Os.28062
Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence /cds=p(196,1476) /gb=AK100065
Os.5279
Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence /cds=p(276,1715) /gb=AK067950
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Sbi.18907
ANR1_23_D09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_23_D09_A002 3', mRNA sequence /clone=ANR1_23_D09_A002 /clone_end=3' /gb=CX611188 /gi=57809908
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787
Vvi.20324
WIN0545.C21_J17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0545_J17 3', mRNA sequence /clone=WIN0545_J17 /clone_end=3' /gb=EC949094

Domain Architecture

G2-like G2-like LOC_Os07g25710.1
DomainStartEndBit scoreE-value
Myb_DNA-binding24829942.41.8e-09
G2-like25129967.95.5e-20

Sequences