Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os06g49040.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os06g49040
Gene model
LOC_Os06g49040.1
Description
Myb-like DNA-binding domain containing protein, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478672 Score: 1

Arabidopsis thaliana

AT3G13040.1 Score: 1
AT3G13040.2 Score: 1

Carica papaya

evm.TU.supercontig_10.12 Score: 1

Populus trichocarpa

269316 Score: 1

Sorghum bicolor

4995425 Score: 1

Vitis vinifera

GSVIVP00029711001 Score: 1

Zea mays

GRMZM2G076488_P01 Score: 1

Expression data

Expressed Sequence Tags

At.11993
Arabidopsis thaliana myb family transcription factor (AT3G13040) mRNA, complete cds /cds=p(259,1608) /gb=NM_112141
At.4525
Arabidopsis thaliana PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (PHR1) mRNA, complete cds /cds=p(156,1385) /gb=NM_119003
Hv.21567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf70h19, mRNA sequence /gb=AK250181
Hv.9076
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf91j11, mRNA sequence /gb=AK250795
Mtr.12360
AC2769 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617082
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Os.24994
Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence /cds=p(352,1638) /gb=AK063486
Os.28062
Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence /cds=p(196,1476) /gb=AK100065
Os.52219
Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence /cds=p(203,1606) /gb=AK065704
Os.5279
Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence /cds=p(276,1715) /gb=AK067950
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Ppa.2695
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_163773) mRNA, complete cds /cds=p(224,1507) /gb=XM_001763286
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Sbi.14619
GABR1_37_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_37_H02_A002 5', mRNA sequence /clone=GABR1_37_H02_A002 /clone_end=5' /gb=CX618130 /gi=57816917

Domain Architecture

G2-like G2-like LOC_Os06g49040.1
DomainStartEndBit scoreE-value
Myb_DNA-binding27132244.83.5e-10
G2-like27432272.81.8e-21

Sequences