Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os05g41240.3

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os05g41240
Gene model
LOC_Os05g41240.3
Description
Myb-like DNA-binding domain containing protein, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_33.163 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41240.1 Score: 1
LOC_Os05g41240.2 Score: 1
LOC_Os05g41240.3 Score: 1

Ostreococcus tauri

35984 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41240.1 Score: 1
LOC_Os05g41240.2 Score: 1
LOC_Os05g41240.3 Score: 1

Sorghum bicolor

5060723 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41240.1 Score: 1
LOC_Os05g41240.2 Score: 1
LOC_Os05g41240.3 Score: 1

Vitis vinifera

GSVIVP00023376001 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41240.1 Score: 1
LOC_Os05g41240.2 Score: 1
LOC_Os05g41240.3 Score: 1

Zea mays

GRMZM2G117854_P01 Score: 1
GRMZM2G117854_P02 Score: 1
GRMZM2G117854_P03 Score: 1
GRMZM2G179730_P01 Score: 1
GRMZM2G179730_P02 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41240.1 Score: 1
LOC_Os05g41240.2 Score: 1
LOC_Os05g41240.3 Score: 1

Expression data

Expressed Sequence Tags

At.24449
Arabidopsis thaliana myb family transcription factor (AT2G01060) mRNA, complete cds /cds=p(541,1254) /gb=NM_201656
At.50439
Arabidopsis thaliana myb family transcription factor (AT5G06800) mRNA, complete cds /cds=p(213,1340) /gb=NM_120763
Hv.9487
HI06J07w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J07 3-PRIME, mRNA sequence /clone=HI06J07 /clone_end=3' /gb=CB858316
Mtr.10993
Medicago truncatula clone MTYFD_FE_FF_FG1G-F-19 unknown mRNA /cds=p(94,1086) /gb=BT052374
Mtr.12360
AC2769 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617082
Os.13978
Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence /cds=p(326,1099) /gb=AK069306
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Os.47566
Oryza sativa (japonica cultivar-group) Os08g0346500 (Os08g0346500) mRNA, complete cds /cds=p(1,924) /gb=NM_001068140
Os.5279
Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence /cds=p(276,1715) /gb=AK067950
Os.7599
Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence /cds=p(162,1151) /gb=AK071731
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Ppa.13177
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_233986) mRNA, complete cds /cds=p(1,1566) /gb=XM_001769164
Ppa.2229
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_169970) mRNA, complete cds /cds=p(529,3219) /gb=XM_001777685
Ppa.2695
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_163773) mRNA, complete cds /cds=p(224,1507) /gb=XM_001763286
Ppa.3238
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_171678) mRNA, complete cds /cds=p(1,2136) /gb=XM_001781505
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Sbi.14619
GABR1_37_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_37_H02_A002 5', mRNA sequence /clone=GABR1_37_H02_A002 /clone_end=5' /gb=CX618130 /gi=57816917
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787

Domain Architecture

G2-like G2-like LOC_Os05g41240.3
DomainStartEndBit scoreE-value
Myb_DNA-binding479839.31.6e-08
G2-like509866.11.9e-19

Sequences