Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os04g56990.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os04g56990
Gene model
LOC_Os04g56990.1
Description
Myb-like DNA-binding domain containing protein, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

5058074 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g56990.1 Score: 1
LOC_Os04g56990.3 Score: 0.976

Zea mays

GRMZM2G083839_P01 Score: 1
GRMZM2G124495_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g56990.1 Score: 1
LOC_Os04g56990.3 Score: 0.975

Expression data

Expressed Sequence Tags

At.26183
Arabidopsis thaliana myb family transcription factor (AT5G29000) mRNA, complete cds /cds=p(47,1288) /gb=NM_122784
At.4525
Arabidopsis thaliana PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (PHR1) mRNA, complete cds /cds=p(156,1385) /gb=NM_119003
At.50439
Arabidopsis thaliana myb family transcription factor (AT5G06800) mRNA, complete cds /cds=p(213,1340) /gb=NM_120763
Hv.21567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf70h19, mRNA sequence /gb=AK250181
Mtr.10993
Medicago truncatula clone MTYFD_FE_FF_FG1G-F-19 unknown mRNA /cds=p(94,1086) /gb=BT052374
Mtr.12360
AC2769 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617082
Os.13978
Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence /cds=p(326,1099) /gb=AK069306
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Os.24994
Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence /cds=p(352,1638) /gb=AK063486
Os.28062
Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence /cds=p(196,1476) /gb=AK100065
Os.7512
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA208P17, full insert sequence /gb=CT830983
Os.7599
Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence /cds=p(162,1151) /gb=AK071731
Os.91269
CT861068 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRA221I22, mRNA sequence /clone=OSIGCRA221I22 /gb=CT861068
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Pba.2360
WS0194.B21_B04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_B04 3', mRNA sequence /clone=WS0194_B04 /clone_end=3' /gb=CV231285
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787
Vvi.20324
WIN0545.C21_J17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0545_J17 3', mRNA sequence /clone=WIN0545_J17 /clone_end=3' /gb=EC949094

Domain Architecture

G2-like G2-like LOC_Os04g56990.1
DomainStartEndBit scoreE-value
Myb_DNA-binding24329441.14.3e-09
G2-like24629472.91.7e-21

Sequences