Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os02g46940.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os02g46940
Gene model
LOC_Os02g46940.1
Description
MYB family transcription factor, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

554056 Score: 1
590054 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g46940.1 Score: 1
LOC_Os08g06370.1 Score: 1

Sorghum bicolor

4979842 Score: 1

Vitis vinifera

GSVIVP00015692001 Score: 1

Zea mays

GRMZM2G043361_P01 Score: 1
GRMZM2G070865_P01 Score: 1

Expression data

Expressed Sequence Tags

Os.24481
Oryza sativa (japonica cultivar-group) Os08g0160300 (Os08g0160300) mRNA, complete cds /cds=p(1,1038) /gb=NM_001067582
Pba.6907
WS02536.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E12 3', mRNA sequence /clone=WS02536_E12 /clone_end=3' /gb=DT488382
Pth.6907
WS02536.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E12 3', mRNA sequence /clone=WS02536_E12 /clone_end=3' /gb=DT488382

Domain Architecture

G2-like G2-like LOC_Os02g46940.1
DomainStartEndBit scoreE-value
Myb_DNA-binding19724843.58.1e-10
G2-like20024861.25.5e-18

Sequences