Plant Transcription factor database - CTBE
version: 3.0

Gene model: LOC_Os01g74020.1

Identification

Species:
Oryza sativa subsp. japonica
Locus
LOC_Os01g74020
Gene model
LOC_Os01g74020.1
Description
MYB family transcription factor, putative, expressed
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496092 Score: 1

Arabidopsis thaliana

AT5G59570.1 Score: 1

Carica papaya

evm.TU.supercontig_81.112 Score: 1

Physcomitrella patens

25200 Score: 1

Populus trichocarpa

203640 Score: 1

Sorghum bicolor

4168609 Score: 1

Selaginella moellendorffii

36646 Score: 1

Vitis vinifera

GSVIVP00024277001 Score: 1

Zea mays

GRMZM2G067702_P01 Score: 1

Expression data

Expressed Sequence Tags

At.29219
Arabidopsis thaliana myb family transcription factor (AT5G59570) mRNA, complete cds /cds=p(160,1056) /gb=NM_125349
At.47951
Arabidopsis thaliana PCL1 (PHYTOCLOCK 1); DNA binding (PCL1) mRNA, complete cds /cds=p(159,1130) /gb=NM_001035746
Hv.20312
HV_CEb0011G20f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0011G20f, mRNA sequence /clone=HV_CEb0011G20f /gb=BE216742
Os.49746
Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA, complete cds /cds=p(218,934) /gb=AY581256
Sbi.15239
RHOH1_23_G11.g3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_23_G11_A002 5', mRNA sequence /clone=RHOH1_23_G11_A002 /clone_end=5' /gb=CN127582 /gi=45953733

Domain Architecture

G2-like G2-like LOC_Os01g74020.1
DomainStartEndBit scoreE-value
Myb_DNA-binding12017047.36e-11
G2-like12317095.23.2e-28

Sequences