Plant Transcription factor database - CTBE
version: 3.0

Gene model: AT5G18240.4

Identification

Species:
Arabidopsis thaliana
Locus
AT5G18240
Gene model
AT5G18240.4
Gene names and synonyms
MYR1 iHOP
Description
MYR1 (MYB-RELATED PROTEIN 1)
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488696 Score: 1

Arabidopsis thaliana

AT5G18240.1 Score: 1
AT5G18240.4 Score: 1

Sorghum bicolor

5049510 Score: 1

Arabidopsis thaliana

AT5G18240.1 Score: 1
AT5G18240.4 Score: 1
AT5G18240.5 Score: 0.979
AT5G18240.2 Score: 0.96
AT5G18240.3 Score: 0.96

Arabidopsis thaliana

AT5G18240.1 Score: 1
AT5G18240.4 Score: 1
AT5G18240.5 Score: 0.976
AT5G18240.2 Score: 0.955
AT5G18240.3 Score: 0.955

Vitis vinifera

GSVIVP00025493001 Score: 1

Arabidopsis thaliana

AT3G04030.3 Score: 1
AT5G18240.1 Score: 1
AT5G18240.4 Score: 1
AT3G04030.2 Score: 0.983
AT5G18240.5 Score: 0.981
AT5G18240.2 Score: 0.964
AT5G18240.3 Score: 0.964
AT3G04030.1 Score: 0.963

Zea mays

GRMZM2G144014_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26588
Arabidopsis thaliana myb family transcription factor (AT3G24120) mRNA, complete cds /cds=p(168,1064) /gb=NM_202627
At.40915
Arabidopsis thaliana myb family transcription factor (AT3G04030) mRNA, complete cds /cds=p(124,1308) /gb=NM_001125095
At.52449
Arabidopsis thaliana unknown protein (AT1G69580) mRNA, complete cds /cds=p(185,1198) /gb=NM_001084329
At.7556
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-67-L10 /cds=p(1181,1327) /gb=AK229641
Mtr.19692
Medicago truncatula clone MTYF5_F6_F7_F81G-N-14 unknown mRNA /cds=p(177,1121) /gb=BT051559
Mtr.22841
Medicago truncatula clone MTYFD_FE_FF_FG1G-O-4 unknown mRNA /cds=m(89,1126) /gb=BT052638
Mtr.8870
MTYEO86TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261876
Os.24699
Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence /cds=p(432,1298) /gb=AK059448
Os.52524
Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence /gb=AK067645
Sbi.8412
RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence /clone=RHOH1_19_A05_A002 /clone_end=5' /gb=CN126830 /gi=45952342
Sbi.8915
GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence /clone=GABR1_14_D04_A002 /clone_end=5' /gb=CX614526 /gi=57813270
Vvi.19363
VVI009B10_584200 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI009B10 5, mRNA sequence /clone=VVI009B10 /clone_end=5' /gb=DT017180
Vvi.2615
CGF1000813_H10 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_H10 5', mRNA sequence /clone=CAST0007_IVF_H10 /clone_end=5' /gb=CF214216

Domain Architecture

Myb_DNA-binding PF00249 AT5G18240.4
DomainStartEndBit scoreE-value
Myb_DNA-binding479847.54.6e-11
G2-like509877.57.2e-23

Sequences