Plant Transcription factor database - CTBE
version: 3.0

Gene model: AT3G46640.2

Identification

Species:
Arabidopsis thaliana
Locus
AT3G46640
Gene model
AT3G46640.2
Gene names and synonyms
LUX iHOP
PCL1 iHOP
Description
PCL1 (PHYTOCLOCK 1); DNA binding
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485038 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Carica papaya

evm.TU.supercontig_81.112 Score: 1

Physcomitrella patens

25200 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Populus trichocarpa

203640 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Selaginella moellendorffii

36646 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Vitis vinifera

GSVIVP00024277001 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Zea mays

GRMZM2G067702_P01 Score: 1

Expression data

Expressed Sequence Tags

At.29219
Arabidopsis thaliana myb family transcription factor (AT5G59570) mRNA, complete cds /cds=p(160,1056) /gb=NM_125349
At.47951
Arabidopsis thaliana PCL1 (PHYTOCLOCK 1); DNA binding (PCL1) mRNA, complete cds /cds=p(159,1130) /gb=NM_001035746
Os.49746
Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA, complete cds /cds=p(218,934) /gb=AY581256
Pba.5228
WS02531.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_L06 3', mRNA sequence /clone=WS02531_L06 /clone_end=3' /gb=DT486700
Pth.5228
WS02531.B21_L06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_L06 3', mRNA sequence /clone=WS02531_L06 /clone_end=3' /gb=DT486700
Sbi.15239
RHOH1_23_G11.g3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_23_G11_A002 5', mRNA sequence /clone=RHOH1_23_G11_A002 /clone_end=5' /gb=CN127582 /gi=45953733

Domain Architecture

Myb_DNA-binding PF00249 AT3G46640.2
DomainStartEndBit scoreE-value
Myb_DNA-binding14619643.57.3e-10
G2-like14919696.81.1e-28

Sequences