Plant Transcription factor database - CTBE
version: 3.0

Gene model: AT1G79430.2

Identification

Species:
Arabidopsis thaliana
Locus
AT1G79430
Gene model
AT1G79430.2
Gene names and synonyms
APL iHOP
WDY iHOP
Description
APL (ALTERED PHLOEM DEVELOPMENT); transcription factor
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477109 Score: 1

Carica papaya

evm.TU.supercontig_32.81 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g07770.1 Score: 1

Populus trichocarpa

765696 Score: 1

Sorghum bicolor

5054744 Score: 1

Vitis vinifera

GSVIVP00002102001 Score: 1

Zea mays

GRMZM2G052544_P01 Score: 1

Expression data

Expressed Sequence Tags

At.22199
Arabidopsis thaliana putative protein (At4g13640) mRNA, complete cds /cds=p(634,1083) /gb=AY081310
At.23550
Arabidopsis thaliana APL (ALTERED PHLOEM DEVELOPMENT); transcription factor (APL) mRNA, complete cds /cds=p(355,1236) /gb=NM_106591
At.26588
Arabidopsis thaliana myb family transcription factor (AT3G24120) mRNA, complete cds /cds=p(168,1064) /gb=NM_202627
At.28330
Arabidopsis thaliana myb family transcription factor (AT3G12730) mRNA, complete cds /cds=p(259,966) /gb=NM_112109
At.40915
Arabidopsis thaliana myb family transcription factor (AT3G04030) mRNA, complete cds /cds=p(124,1308) /gb=NM_001125095
Hv.30926
HX14D10r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D10 5-PRIME, mRNA sequence /clone=HX14D10 /clone_end=5' /gb=CA032790
Mtr.19692
Medicago truncatula clone MTYF5_F6_F7_F81G-N-14 unknown mRNA /cds=p(177,1121) /gb=BT051559
Mtr.22841
Medicago truncatula clone MTYFD_FE_FF_FG1G-O-4 unknown mRNA /cds=m(89,1126) /gb=BT052638
Os.15464
RECm0256 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI027I04, BI075P20, BI106D17, BI125D14 5', mRNA sequence /clone=BI027I04,_BI075P20,_BI106D17,_BI125D14 /clone_end=5' /gb=CX099620
Os.51525
Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence /gb=AK100282
Os.52524
Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence /gb=AK067645
Os.70419
Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence /gb=AK241362
Os.79800
Oryza sativa (japonica cultivar-group) Os02g0174000 (Os02g0174000) mRNA, complete cds /cds=p(1,1152) /gb=NM_001052580
Ppa.20051
CAYY4734.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY4734 5', mRNA sequence /clone=CAYY4734 /clone_end=5' /gb=FC366443
Ppa.8175
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_175642) mRNA, complete cds /cds=p(1,852) /gb=XM_001754399
Pth.1872
Populus trichocarpa clone WS01214_H04 unknown mRNA /cds=p(155,1084) /gb=EF146817
Sbi.8412
RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence /clone=RHOH1_19_A05_A002 /clone_end=5' /gb=CN126830 /gi=45952342
Sbi.8915
GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence /clone=GABR1_14_D04_A002 /clone_end=5' /gb=CX614526 /gi=57813270
Vvi.19363
VVI009B10_584200 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI009B10 5, mRNA sequence /clone=VVI009B10 /clone_end=5' /gb=DT017180

Domain Architecture

Myb_DNA-binding PF00249 AT1G79430.2
DomainStartEndBit scoreE-value
Myb_DNA-binding368747.25.7e-11
G2-like398772.62.1e-21

Sequences