Plant Transcription factor database - CTBE
version: 3.0

Gene model: 871711

Identification

Species:
Arabidopsis lyrata
Gene model
871711
Description
Al_scaffold_0003_352
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G04030.3 Score: 1

Carica papaya

evm.TU.supercontig_785.2 Score: 1

Micromonas sp. RCC299

60184 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g20900.1 Score: 1

Populus trichocarpa

248591 Score: 1

Vitis vinifera

GSVIVP00025493001 Score: 1

Zea mays

GRMZM2G144014_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40915
Arabidopsis thaliana myb family transcription factor (AT3G04030) mRNA, complete cds /cds=p(124,1308) /gb=NM_001125095
At.52449
Arabidopsis thaliana unknown protein (AT1G69580) mRNA, complete cds /cds=p(185,1198) /gb=NM_001084329
At.7556
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-67-L10 /cds=p(1181,1327) /gb=AK229641
Mtr.19692
Medicago truncatula clone MTYF5_F6_F7_F81G-N-14 unknown mRNA /cds=p(177,1121) /gb=BT051559
Mtr.22841
Medicago truncatula clone MTYFD_FE_FF_FG1G-O-4 unknown mRNA /cds=m(89,1126) /gb=BT052638
Mtr.8870
MTYEO86TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261876
Os.50003
Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence /gb=AK119588
Os.51525
Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence /gb=AK100282
Os.52524
Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence /gb=AK067645
Os.79800
Oryza sativa (japonica cultivar-group) Os02g0174000 (Os02g0174000) mRNA, complete cds /cds=p(1,1152) /gb=NM_001052580
Ppa.20051
CAYY4734.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY4734 5', mRNA sequence /clone=CAYY4734 /clone_end=5' /gb=FC366443
Pth.1872
Populus trichocarpa clone WS01214_H04 unknown mRNA /cds=p(155,1084) /gb=EF146817
Sbi.8412
RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence /clone=RHOH1_19_A05_A002 /clone_end=5' /gb=CN126830 /gi=45952342
Sbi.8915
GABR1_14_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_14_D04_A002 5', mRNA sequence /clone=GABR1_14_D04_A002 /clone_end=5' /gb=CX614526 /gi=57813270
Vvi.19363
VVI009B10_584200 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI009B10 5, mRNA sequence /clone=VVI009B10 /clone_end=5' /gb=DT017180
Vvi.2615
CGF1000813_H10 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_H10 5', mRNA sequence /clone=CAST0007_IVF_H10 /clone_end=5' /gb=CF214216

Domain Architecture

G2-like G2-like 871711
DomainStartEndBit scoreE-value
Myb_DNA-binding479845.12.8e-10
G2-like509877.57e-23

Sequences