Plant Transcription factor database - CTBE
version: 3.0

Gene model: 826090

Identification

Species:
Populus trichocarpa
Gene model
826090
Description
estExt_fgenesh4_pg.C_LG_XIX0215
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

163773 Score: 1
173556 Score: 1

Populus trichocarpa

711538 Score: 1
826090 Score: 1

Vitis vinifera

GSVIVP00032839001 Score: 1

Expression data

Expressed Sequence Tags

At.26183
Arabidopsis thaliana myb family transcription factor (AT5G29000) mRNA, complete cds /cds=p(47,1288) /gb=NM_122784
At.40835
Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11 /cds=p(537,1745) /gb=AK118630
At.43867
Arabidopsis thaliana myb family transcription factor (AT2G20400) mRNA, complete cds /cds=p(192,1385) /gb=NM_127599
At.4525
Arabidopsis thaliana PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (PHR1) mRNA, complete cds /cds=p(156,1385) /gb=NM_119003
At.50439
Arabidopsis thaliana myb family transcription factor (AT5G06800) mRNA, complete cds /cds=p(213,1340) /gb=NM_120763
Hv.29844
HVSMEa0011J15f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0011J15f, mRNA sequence /clone=HVSMEa0011J15f /gb=BF621611
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Os.24994
Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence /cds=p(352,1638) /gb=AK063486
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.16182
V009A09.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V009A09 5', mRNA sequence /clone=V009A09 /clone_end=5' /gb=DN501609
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Ptp.334
A052P56.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A052P56 3', mRNA sequence /clone=A052P56 /clone_end=3' /gb=CK088428
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787
Vvi.20324
WIN0545.C21_J17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0545_J17 3', mRNA sequence /clone=WIN0545_J17 /clone_end=3' /gb=EC949094

Domain Architecture

Myb_DNA-binding PF00249 826090
DomainStartEndBit scoreE-value
Myb_DNA-binding20225348.42.6e-11
G2-like20525371.15.7e-21

Sequences