Plant Transcription factor database - CTBE
version: 3.0

Gene model: 785023

Identification

Species:
Populus trichocarpa
Gene model
785023
Description
fgenesh4_pg.C_scaffold_137000032
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_27.192 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g25799.1 Score: 1

Vitis vinifera

GSVIVP00011845001 Score: 1

Zea mays

GRMZM2G113742_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26588
Arabidopsis thaliana myb family transcription factor (AT3G24120) mRNA, complete cds /cds=p(168,1064) /gb=NM_202627
Hv.12075
HV_CEb0020G12f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0020G12f, mRNA sequence /clone=HV_CEb0020G12f /gb=BE558795
Mtr.11460
AC3671 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617558
Mtr.15614
NF102H07EC1F1062 Elicited cell culture Medicago truncatula cDNA clone NF102H07EC 5', mRNA sequence /clone=NF102H07EC /clone_end=5' /gb=BF651193
Os.15464
RECm0256 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI027I04, BI075P20, BI106D17, BI125D14 5', mRNA sequence /clone=BI027I04,_BI075P20,_BI106D17,_BI125D14 /clone_end=5' /gb=CX099620
Os.50003
Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence /gb=AK119588
Pba.3958
Q060C05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873815
Pba.8415
WS02526.BR_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_E08 5', mRNA sequence /clone=WS02526_E08 /clone_end=5' /gb=DT479564
Pth.1872
Populus trichocarpa clone WS01214_H04 unknown mRNA /cds=p(155,1084) /gb=EF146817
Pth.3958
Q060C05 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873815
Pth.8415
WS02526.BR_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_E08 5', mRNA sequence /clone=WS02526_E08 /clone_end=5' /gb=DT479564
Ptp.4282
T063H04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU834640
Vvi.19363
VVI009B10_584200 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI009B10 5, mRNA sequence /clone=VVI009B10 /clone_end=5' /gb=DT017180

Domain Architecture

Myb_DNA-binding PF00249 785023
DomainStartEndBit scoreE-value
Myb_DNA-binding298045.32.2e-10
G2-like328069.22.2e-20

Sequences