Plant Transcription factor database - CTBE
version: 3.0

Gene model: 4999599

Identification

Species:
Sorghum bicolor
Gene model
4999599
Description
estExt_fgenesh1_pg.C_chr_21196
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

317308 Score: 1
489672 Score: 1

Sorghum bicolor

4998157 Score: 1
4999599 Score: 1

Arabidopsis thaliana

AT4G28610.1 Score: 1

Carica papaya

evm.TU.supercontig_87.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25710.2 Score: 1
LOC_Os07g25710.1 Score: 0.921
LOC_Os07g25710.3 Score: 0.921

Populus trichocarpa

241469 Score: 1
711538 Score: 1

Sorghum bicolor

4998157 Score: 1
4999599 Score: 1

Zea mays

GRMZM2G162409_P03 Score: 1

Expression data

Expressed Sequence Tags

At.50439
Arabidopsis thaliana myb family transcription factor (AT5G06800) mRNA, complete cds /cds=p(213,1340) /gb=NM_120763
Hv.21567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf70h19, mRNA sequence /gb=AK250181
Hv.29844
HVSMEa0011J15f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0011J15f, mRNA sequence /clone=HVSMEa0011J15f /gb=BF621611
Hv.9076
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf91j11, mRNA sequence /gb=AK250795
Os.28062
Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence /cds=p(196,1476) /gb=AK100065
Os.5279
Oryza sativa Japonica Group cDNA clone:J013127L15, full insert sequence /cds=p(276,1715) /gb=AK067950
Os.58147
Oryza sativa (japonica cultivar-group) Os02g0814500 (Os02g0814500) mRNA, complete cds /cds=p(1,1056) /gb=NM_001055028
Ppa.2695
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_163773) mRNA, complete cds /cds=p(224,1507) /gb=XM_001763286
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Sbi.18907
ANR1_23_D09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_23_D09_A002 3', mRNA sequence /clone=ANR1_23_D09_A002 /clone_end=3' /gb=CX611188 /gi=57809908
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787
Vvi.20324
WIN0545.C21_J17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0545_J17 3', mRNA sequence /clone=WIN0545_J17 /clone_end=3' /gb=EC949094

Domain Architecture

Myb_DNA-binding PF00249 4999599
DomainStartEndBit scoreE-value
Myb_DNA-binding26231343.96.5e-10
G2-like26531372.32.5e-21

Sequences