Plant Transcription factor database - CTBE
version: 3.0

Gene model: 489672

Identification

Species:
Arabidopsis lyrata
Gene model
489672
Description
fgenesh2_kg.6__2806__AT5G29000.2
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G29000.2 Score: 1

Micromonas pusilla CCMP1545

61323 Score: 1

Populus trichocarpa

241469 Score: 1

Arabidopsis lyrata

317308 Score: 1
489672 Score: 1

Sorghum bicolor

4998157 Score: 1
4999599 Score: 1

Vitis vinifera

GSVIVP00032839001 Score: 1

Expression data

Expressed Sequence Tags

At.26183
Arabidopsis thaliana myb family transcription factor (AT5G29000) mRNA, complete cds /cds=p(47,1288) /gb=NM_122784
At.40835
Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11 /cds=p(537,1745) /gb=AK118630
At.4525
Arabidopsis thaliana PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (PHR1) mRNA, complete cds /cds=p(156,1385) /gb=NM_119003
Mtr.10993
Medicago truncatula clone MTYFD_FE_FF_FG1G-F-19 unknown mRNA /cds=p(94,1086) /gb=BT052374
Os.13978
Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence /cds=p(326,1099) /gb=AK069306
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Pba.1402
WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_I07 5', mRNA sequence /clone=WS02519_I07 /clone_end=5' /gb=DT477286
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Pth.2360
Populus trichocarpa clone WS0126_F15 unknown mRNA /cds=p(93,809) /gb=EF147970
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787
Vvi.20324
WIN0545.C21_J17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0545_J17 3', mRNA sequence /clone=WIN0545_J17 /clone_end=3' /gb=EC949094

Domain Architecture

G2-like G2-like 489672
DomainStartEndBit scoreE-value
Myb_DNA-binding23428544.34.7e-10
G2-like237285723.2e-21

Sequences