Plant Transcription factor database - CTBE
version: 3.0

Gene model: 478672

Identification

Species:
Arabidopsis lyrata
Gene model
478672
Description
fgenesh2_kg.3__1373__AT3G13040.1
Family
G2-like
3D structure (top 5)
1IRZ 2B5U
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G13040.1 Score: 1
AT3G13040.2 Score: 1

Carica papaya

evm.TU.supercontig_10.12 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g49040.1 Score: 1

Physcomitrella patens

163773 Score: 1

Populus trichocarpa

215873 Score: 1

Sorghum bicolor

4995425 Score: 1

Vitis vinifera

GSVIVP00029711001 Score: 1

Zea mays

GRMZM2G010920_P01 Score: 1

Expression data

Expressed Sequence Tags

At.11993
Arabidopsis thaliana myb family transcription factor (AT3G13040) mRNA, complete cds /cds=p(259,1608) /gb=NM_112141
At.26183
Arabidopsis thaliana myb family transcription factor (AT5G29000) mRNA, complete cds /cds=p(47,1288) /gb=NM_122784
Mtr.12360
AC2769 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617082
Os.13978
Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence /cds=p(326,1099) /gb=AK069306
Os.14719
Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence /cds=p(314,1180) /gb=AK103241
Os.24994
Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence /cds=p(352,1638) /gb=AK063486
Os.28062
Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence /cds=p(196,1476) /gb=AK100065
Os.47566
Oryza sativa (japonica cultivar-group) Os08g0346500 (Os08g0346500) mRNA, complete cds /cds=p(1,924) /gb=NM_001068140
Os.52219
Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence /cds=p(203,1606) /gb=AK065704
Ppa.13177
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_233986) mRNA, complete cds /cds=p(1,1566) /gb=XM_001769164
Ppa.4715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_170944) mRNA, complete cds /cds=p(1,2388) /gb=XM_001779951
Vvi.12508
WIN022.C21_K17 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN022_K17 3', mRNA sequence /clone=WIN022_K17 /clone_end=3' /gb=EC923787

Domain Architecture

G2-like G2-like 478672
DomainStartEndBit scoreE-value
Myb_DNA-binding23828938.13.4e-08
G2-like24128965.33.4e-19

Sequences