Plant Transcription factor database - CTBE
version: 3.0

Gene model: 474091

Identification

Species:
Arabidopsis lyrata
Gene model
474091
Description
fgenesh2_kg.1__4045__AT1G49560.1
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G49560.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g55590.1 Score: 1

Populus trichocarpa

557338 Score: 1

Expression data

Expressed Sequence Tags

At.38204
Arabidopsis thaliana myb family transcription factor (AT1G49560) mRNA, complete cds /cds=p(172,1173) /gb=NM_103844
Os.25453
Oryza sativa Japonica Group cDNA clone:001-200-C11, full insert sequence /cds=p(141,1187) /gb=AK105625
Pba.138
WS01230.BR_K12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_K12 5', mRNA sequence /clone=WS01230_K12 /clone_end=5' /gb=DT474056
Pth.138
Populus trichocarpa clone WS0123_L02 unknown mRNA /cds=p(142,807) /gb=EF147597
Vvi.15531
WIN026.TB24.1_C08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN026_C08 3', mRNA sequence /clone=WIN026_C08 /clone_end=3' /gb=EC924639
Vvi.19728
CSECS173G04_POSu0038 CabSau Berry Postveraison Stage 38 (POSu0038) Vitis vinifera cDNA clone CSECS173G04 3', mRNA sequence /clone=CSECS173G04 /clone_end=3' /gb=DV939966
Vvi.6387
WIN027.TB24.1_K06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_K06 3', mRNA sequence /clone=WIN027_K06 /clone_end=3' /gb=EC925069

Domain Architecture

G2-like G2-like 474091
DomainStartEndBit scoreE-value
Myb_DNA-binding188239391.8e-08
G2-like19123963.31.3e-18

Sequences