Plant Transcription factor database - CTBE
version: 3.0

Gene model: 419693

Identification

Species:
Populus trichocarpa
Gene model
419693
Description
gw1.VIII.1121.1
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

225637 Score: 1
419693 Score: 1

Arabidopsis lyrata

475994 Score: 1
880939 Score: 1

Arabidopsis thaliana

AT1G68670.1 Score: 1

Carica papaya

evm.TU.supercontig_1.210 Score: 1

Populus trichocarpa

225637 Score: 1
419693 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g22020.1 Score: 1

Sorghum bicolor

5008445 Score: 1

Selaginella moellendorffii

66160 Score: 1

Vitis vinifera

GSVIVP00030296001 Score: 1

Populus trichocarpa

225637 Score: 1
419693 Score: 1

Zea mays

GRMZM2G016370_P01 Score: 1
GRMZM2G024361_P01 Score: 1
GRMZM2G159119_P01 Score: 1
GRMZM2G171025_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20366
Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds /cds=p(88,1122) /gb=AF367336
At.25159
Arabidopsis thaliana myb family transcription factor (AT1G25550) mRNA, complete cds /cds=p(211,1245) /gb=NM_102366
At.27154
Arabidopsis thaliana myb family transcription factor (AT1G68670) mRNA, complete cds /cds=p(316,1380) /gb=NM_105539
At.37325
Arabidopsis thaliana clone 157740 mRNA, complete sequence /cds=p(91,1146) /gb=AY085570
Mtr.11689
EST509293 HOGA Medicago truncatula cDNA clone pHOGA-17H9 5' end, mRNA sequence /clone=pHOGA-17H9 /clone_end=5' /gb=BG647674
Vvi.24101
sT7aVVM002B15064 VVM Vitis vinifera cDNA clone VVM002B15064 5' similar to emb_CAO42100.1 unnamed protein product [Vitis vinifera]. Expect = 2e-128, mRNA sequence /clone=VVM002B15064 /clone_end=5' /gb=FC061778

Domain Architecture

Myb_DNA-binding PF00249 419693
DomainStartEndBit scoreE-value
Myb_DNA-binding22627738.72.1e-08
G2-like229277723.1e-21

Sequences