Plant Transcription factor database - CTBE
version: 3.0

Gene model: 203640

Identification

Species:
Populus trichocarpa
Gene model
203640
Description
gw1.IX.4105.1
Family
G2-like
3D structure (top 5)
1IRZ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485038 Score: 1

Arabidopsis thaliana

AT3G46640.1 Score: 1
AT3G46640.2 Score: 1

Carica papaya

evm.TU.supercontig_81.112 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g74020.1 Score: 1

Physcomitrella patens

34063 Score: 1

Sorghum bicolor

4168609 Score: 1

Selaginella moellendorffii

36646 Score: 1

Vitis vinifera

GSVIVP00024277001 Score: 1

Zea mays

GRMZM2G067702_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27776
Arabidopsis thaliana myb family transcription factor (AT2G40970) mRNA, complete cds /cds=p(178,924) /gb=NM_129662
At.29219
Arabidopsis thaliana myb family transcription factor (AT5G59570) mRNA, complete cds /cds=p(160,1056) /gb=NM_125349
At.33034
Arabidopsis thaliana myb family transcription factor (AT5G05090) mRNA, complete cds /cds=p(162,962) /gb=NM_120591
At.39869
Arabidopsis thaliana myb family transcription factor (AT3G10760) mRNA, complete cds /cds=p(235,1242) /gb=NM_111913
At.47951
Arabidopsis thaliana PCL1 (PHYTOCLOCK 1); DNA binding (PCL1) mRNA, complete cds /cds=p(159,1130) /gb=NM_001035746
Os.49746
Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA, complete cds /cds=p(218,934) /gb=AY581256
Sbi.15239
RHOH1_23_G11.g3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_23_G11_A002 5', mRNA sequence /clone=RHOH1_23_G11_A002 /clone_end=5' /gb=CN127582 /gi=45953733
Vvi.23794
sT7aVVM025L13053 VVM Vitis vinifera cDNA clone VVM025L13053 5' similar to emb_CAN81044.1 hypothetical protein [Vitis vinifera]. Expect = 3e-72, mRNA sequence /clone=VVM025L13053 /clone_end=5' /gb=FC069748

Domain Architecture

Myb_DNA-binding PF00249 203640
DomainStartEndBit scoreE-value
Myb_DNA-binding13318339.21.5e-08
G2-like13618396.51.4e-28

Sequences